OpenSlide is a C library that provides a simple interface to read whole-slide images (also known as virtual slides).
See also:
Questions tagged [openslide]
53 questions
0
votes
1 answer
Openslide: Replace "label" image
I'm using openslide-python to read whole slide images in the Mirax format (mrxs). Now I'd like to replace the "label" barcode image with a custom one. Unfortunately,
f.associated_images["label"] = label_new
raises
TypeError: '_AssociatedImageMap'…
Mario Kreutzfeldt
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2 answers
Java Swing: Can the mouse make changes to two overlayed JPanels at the same time?
I'm new to swing, and i have the following problem:
I am using the openslide-java library to view whole slide images. There is a class called OpenSlideView that extends JPanel, and its purpose is to view the images. This class has the capability of…
MrAr0s
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0
votes
1 answer
How to set PATH before imports occur in a nice way?
I have a Python script which uses openslide-python.
openslide-python requires that OpenSlide binaries are in the DLL search path on Windows.
I am planning to distribute my application in the future and I don't want that users download OpenSlide…
DfM
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1 answer
Openslide libjpeg error: Wrong JPEG library version
I'm working with Openslide's python bindings. I am using Tif images, which are supported by Openslide. It seems I am able to use the methods read_region and get_thumbnail with a smaller, binary masked Tif of about 100 mb's.
However, with a larger,…
Hunter Jackson
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votes
1 answer
How to scale up the 20x (.svs whole-slide-image) to 40x slides?
I have a whole-slide-images (.svs format) which are scanned at 20x. For my problem, I would like to upscale the slides to 40x along with the slide metadata. I tried it by the combination of the openslide, NumPy, cv2, and vips command. For a smaller…
Murali Selvaraj
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votes
1 answer
Manual Annotation with Tkinter
I am using Tkinter to import images with Openslide. I would like to integrate a manual annotation module into my program like this:
class ResizableCanvas(Canvas):
def __init__(self, parent, **kwargs):
Canvas.__init__(self, parent,…
Turing
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votes
1 answer
How to use openslide library in MATLAB?
How should I install openslide library and load it in MATLAB? Using openslide_load_library() I got the following error: libopenslide.0.dylib not available on the MATLAB path
Jiaxin He
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votes
1 answer
issue with Openslide package locating on Mac
Been trying to download PathmL on Mac , and i followed the documentation instructions (https://github.com/Dana-Farber-AIOS/pathml#installation). including downloading OpenSlide, however I keep on. receiving this error, ''Couldn't locate OpenSlide…
