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Questions tagged [lsf]

LSF, aka Load Sharing Facility is software that executes batch jobs on networked Unix and Windows systems on many different architectures. It is commonly used in HPC Clusters in many universities and research centers around the world.

The Load Sharing Facility or LSF is a set of tools for distributing jobs across a set of networked systems. If was developed initially by the Platform Computing company, which was acquired by IBM in 2012. It is now called IBM Spectrum LSF

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Sort bjobs output

Is there a way to sort the bjobs output based on submit_time ? Or according to some other field ? JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME
Jean
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When running script via crontab, issue coming. On manually running on a shell, no issue

use strict; use warnings; ################## Checking if regressions are running my $jobs; my $output=`bjobs -w | tr -s " " | cut -d " " -f7 | tail -n +2 | sort -u | grep -i "_pv_"`; ## Find out all the jobs running on cmd print "$output…
PPP
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snakemake LSF issues

I have a pipeline which works just fine in the command line snakemake -l --snakefile snakemake_example/sankefile_test9.txt I would like to be able to use it on the cluster. The pipeline takes samples (specified in the config file), and runs a few…
naamako
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very strange error ***glibc detected** free() invalid pointer

I saw there is lots of questions related to this, but I did not find one that is similar to mine. I am running a model written in mixed C and Fortran on a LSF platform. The wired thing is that my model was running fine until last week it starts to…
harmony
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