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Questions tagged [hmisc]

Hmisc is an R package of miscellaneous utility functions.

Hmisc is an package of miscellaneous functions by Frank Harrell. It contains many functions useful for , ting, utility operations, functions for computing and power, importing datasets, imputing , advanced table making, , manipulation, conversion of R objects to code, and recoding variables.

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Problem passing family argument to fit.mult.impute for multiple imputation with modified Poisson using Hmisc package

I was previously able to run a modified Poisson regression using data created through multiple imputation with the Hmisc package. I ran the code a month ago without issue, but I'm now having problems using the same code and data. Specifically, I am…
Leila Hojat
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Hmisc package : ERROR in parse(outFile)...unexpected '>'

I am a beginner in R and I am trying to install arrayQualityMetrics package there's an error though in the 'Hmisc' dependency I get this error : Error in parse(outFile) : /tmp/RtmpkFTuHf/R.INSTALLbd637e8c1e92/Hmisc/R/describe.s:1443:63: unexpected…
shatty mariem
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How to Set Minimum and Maximum Values in Hmisc Plots in R?

I want to plot all continues and categorical variables together. How can I have minimum and maximum values in plots that I made by Hmisc R package? If you have any suggestion about using of other R packages for this purpose it will be…
Mostafa Ahmadi
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error when applying functions like replace_na() from tidyr on labelled columns of dataframe in R

I get error below when I want to apply a function on the labelled columns. here as an example I applied mean() function. library(tidyr) library(dplyr) library(Hmisc) df <- data.frame(a = LETTERS[1:5], b = c(1,2,NA,4,5)) …
Mathica
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How to obtain a descriptive LateX table of continuous variable stratified by groups in R

dat <- data.frame(outcome = rnorm(25), sex = sample(c("F", "M"), 25, replace = TRUE), age_group = sample(c(1, 2, 3), 25, replace = TRUE)) > head(dat) outcome sex age_group 1 1.1423 F 2 2 0.0998 M 1 3…
Adrian
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How to obtain the Latex source code for table generated using Hmisc in R

library(Hmisc) options(digits=3) set.seed(173) sex <- factor(sample(c("m","f"), 500, rep=TRUE)) country <- factor(sample(c('US', 'Canada'), 500, rep=TRUE)) age <- rnorm(500, 50, 5) sbp <- rnorm(500, 120, 12) label(sbp) <- 'Systolic BP' units(sbp) <-…
Adrian
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summary and plot for multiple subgroups(more columns)

I am interested in two things 1) Summary for multiple subgroups in the same table and 2) dotplot for the subgroups based on the summary generated in step1. For example , if this is my dataset data("pbc") I like to generate summary of…
Ahir Bhairav Orai
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Error in Hmisc Package installation and require command (MAC M1)

I just tried to install "Hmisc" package via R software on my MAC (M1) and received the following error: > require(Hmisc) Loading required package: Hmisc **Error: package or namespace load failed for ‘Hmisc’ in loadNamespace(j <- i[[1L]], c(lib.loc,…
Emmanuel ZT
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Replacing column names, with matching column names, that have a label attached

I have data as follows: library(data.table) library(haven) library(Hmisc) library(foreign) df <- fread("A B D C E 1 2 2 3 1") For some of the variables I want to add column labels Lbs (mainly for Stata use). Lbl <-…
Tom
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Getting the labels of the column names (hmisc) and applying them to another dataframe

I have a question similar to this one. I have a dataframe with labels which I can get out as follows: library(data.table) library(haven) library(Hmisc) library(foreign) df <- fread("A B C 1 2 3") label(df$A) <- "Variable label for…
Tom
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Adding density lines to backtoback histogram

I am using the histbackback function from the Hmisc package to generate two back-to-back histograms. I managed to add colors to the bars, but I did not manage to add density lines to both histograms. Could someone help me out? Here is the code I…
Stex
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Change breaks in hist.data.frame

Is there a way to individually set the breaks in hist.data.frame from the package Hmisc? I tried to use bins but it doesn't seem to work
Michael Bigler
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Error installing Hmisc package in R Studio

I'm new in R and I've been having some issues installing Hmisc package in order to elaborate a Spearman's correlation heatmap. The warning and error are as follows: 18 warnings generated. gfortran -mmacosx-version-min=10.13…
Celia García Díaz
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Hmisc describe output when export as latex file giving API error 2

I am new to latex and I am trying to output the R results from describe( ) function through latex( ). A .tex file is being created but it is not giving me a pdf output df = data.frame(A = rnorm(n = 100, 0,1)) %>% dplyr::mutate(B = 2*A+ runif(n =…
Dominic Joseph
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How to use approxExtrap (Hmisc package) with dplyr?

I'm trying to perform linear extrapolation and can't figure out the correct notation to apply the approxExtrap function from the Hmisc package. I have seen some examples, but none that I've been able to apply. I have been able to use the normal…
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