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Questions tagged [ggpubr]

An R package to prepare publication ready plots based on the ggplot2 plotting system.

532 questions
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Adding evolution lines to a stacked barplot

I would like to add lines on my stacked barplot in order to bring out the evolution group by group. Currently, I found an alternative solution with the ggpubr package. Any help will be appreciate ! Thanks ! # My dataset dff # day composition…
Alex Yahiaoui Martinez
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Error Adding p-value to parallel coordinates plot (ggplot)

I have a data set that is paired data from multiple samples that I want to do a parallel coordinates graph with and include a p-value above (i.e. plot each data point in each group and link the pairs with a line and have the comparison statistic…
Michael Bale
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adding anova test result in box plot by ggpubr in r

I have my data below and I would like to plot a multiple box plot with the ANOVA test result shown on the plot. > combined SampleID chao1 Samples Sgroup Bgroup Duration 1 BSS21 1275.1071 BSS20 BSS S 20d 2 BSS22…
Lennon Lee
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Adding p-values to compare groups means at different at times in gganimate gif with boxplots/violins

My current code for printing violins using gganimate looks like this library(ggplot2); library(gganimate); library(ggpubr) ggplot(dat2, aes(x=diet, y=bicep, fill=diet)) + geom_violin() + scale_fill_manual(values=c("#00AFBB", "#FC4E07")) + …
DiscoR
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ggpubr -> ggline plot: not able to reproduce examples with multiple factors

I have the feeling that R is not working properly on my system. I want to use an interaction plot to present my two-way ANOVA results. So I used the package ggpubr and am plotting with ggline using the example with multiple factors. It did not show…
Induriel
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An error is raised when I use stat_compare_means

I tried with R to add the "p" values on a boxplot, but an error is raised when I use stat_compare_means. I looked quickly on google but I still do not understand ... Here is the boxplot I try to display : boxplot <- ggplot(data, aes(x = Produit, y…
Gleipnir
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Change deviation point of ggbarplot

How can I change the deviation point of ggpubr::ggbarplot graph from 0 to 1. All the bars with values <1 face down with blue color using the example below library(ggpubr) # Load data data("mtcars") dfm <- mtcars # Convert the cyl variable to a…
Keniajin
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putting multiple plots in one panel

I am trying to plot a scatter plot in R using ggscatter function from ggpubr package. I am showing you a subset of my data.frame tracking_id gene_short_name B1 B2 C1 C2 ENSG00000000003.14 TSPAN6 1.2 1.16 1.22 1.26 ENSG00000000419.12 DPM1…
user3138373
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compare dependent proportions in a ggplot

My problem I would like to add results of a mcnemar.test (or another test that compares dependent proportions) to a Sankey Diagram using ggplot2 and ggalluvial My test data: df <- data.frame(timepoint=rep(0:2,…
captcoma
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Add ylabel and point shape change in ggpairs

ggpairs provide graph with two box plots connecting points to show before and after situation after giving an intervention. Want to change y axis label "Resist" "Suscept" instead of "3GCr" and "3GCs". And want to change data point with r default…
Md. Rayhanul Islam
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Adding axis labels and title to ggballoonplot()

The code I used and the result can be seen in the image below. The main problem is that the title doesn't appear in the center and the x and y labels don't appear at all. How do I fix this? The graph and code
StackUser
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stat_compare_means() gives different p.value than compare_means() or t.test()

I would like to plot data with ggplot2 and add p-values using ggpubr. But the plotted p-values don't match the p-values I calculate with compare_means() or t.test(). This is my data: Group <- rep(c('A'), each=12) Drug <- rep(c('x','y'), each= 6) RC…
NRuecker
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How to preserve plot sizes when stacking with common x-axes in ggarrange?

I am trying to stack plots with common x- and y-axes in ggplot. What I want to do is have only the bottom plot show the x-axis labels and titles. But I've never been able to figure out how to do this cleanly in ggplot2 without having the bottom plot…
Ryan Utz
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Specify wilcox.test alternative using stat_compare_means with gpubr

I am using the stat_compare_means() plotting function from gpubr in R, and I'm trying to specify a left-tailed (or alternative = "less") specification for the wilcox.test. Unfortunately I cannot get the function to give me the ability to do…
Nick
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Change legend labels in ggpubr

Is there a way to customize the labels in a legend when utilizing ggboxplot? I have a barplot with a legend in which the labels are taken from the data frame columns. I would like to change these labels without having to change the label of the…
David
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