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Questions tagged [ggally]

GGally is designed to be a helper to ggplot2. It contains templates for different plots to be combined into a plot matrix, a parallel coordinate plot function, as well as a function for making a network plot.

GGally is designed to be a helper to . It contains templates for different plots to be combined into a plot matrix, a parallel coordinate plot function, as well as a function for making a network plot.

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Vignettes

196 questions
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How do I add shading and color to the confidence intervals in ggplot 2 generated Kaplan-Meier plot?

I would like to have the shading of the confidence intervals for the survival estimates. Now I have black lines. library(survival) library(ggplot2) library(GGally) data(lung) sf.sex <- survfit(Surv(time, status) ~ sex, data = lung) pl.sex <-…
FTF
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How to remove axis scale in ggpairs?

I have a matrix of scatterplots and correlations depicted below. I would like to get rid of the x and y axis (0, 5, 10, 15) numbers that are at each position in the diagonal. I would also like to get rid of the word "Corr:", so that only the…
Carmen Sandoval
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Arranging GGally plots with gridExtra?

I'd like to arrange my ggpairs plots with arrangeGrob: library(GGally) library(gridExtra) df <- structure(list(var1 = 1:5, var2 = 4:8, var3 = 6:10), .Names = c("var1", "var2", "var3"), row.names = c(NA, -5L), class = "data.frame") p1 <-…
erc
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GGally: extract data from a plot

I'd like to make a data frame that contains the summarized data (Variables and correlation values) used to generate the ggplot from GGally above. library(ggplot2) library(GGally) data(flea) p <- ggpairs(flea, columns = 2:4) p.2.df <-…
Leprechault
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How to display coloured group correlations with scale_colour_manual in ggpairs (R)?

I'm using ggpairs for data with 3 groups. The problem is that not all variables have all groups and therefore, some correlations only need to show 2 groups. Because of the automatic alphabetical ordering of the groups by ggpairs, the colouring is…
lvdb
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how to define facet axis limits in ggpairs function

Having a ggpairs function, how would one limit range of lower facets to e.g. 0.5 for x and y? library(GGally) xy <- data.frame(matrix(runif(4 * 1000), ncol = 4)) ggpairs(xy)
Roman Luštrik
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Creating multiple ggplots with dplyr

After creating a plot matrix using GGally::ggpairs(), I would like to store the individual scatter plots for later use. Here is my current code: # load necessary package library(GGally) # loads `ggplot2` library(magrittr) # allows for the use of…
samvoit4
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How to get a single Interactive Correlation scatterplot matrix triangle with R ggpairs and plotly

I am attempting to get an interactive scatterplot matrix for ~5 variables I am interested in seeing how the observations of each correlate with each other, and to spot and identify outliers. The problem is that plotly is behaving unpredictably, in…
andemexoax
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Change diagonal plots in ggpairs

I'm not able to change the diagonal plots in a ggpair-plot. I would like to change their appearance in general and maybe starting by leaving them blank. This is how I think it should be: ggpairs(data=df, columns=1:3, diag =…
Ben
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GGally::ggpairs - show axes and variable labels

I'm trying to create a matrix plot using GGally::ggpairs that just has scatterplots in the upper portion of the figure: library(ggplot2) library(GGally) data(iris) ggpairs(iris, columns = 1:4, diag = "blank", upper = list(continuous =…
Lucy Wheeler
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Adjust group text aesthetics in ggpairs()

I am using ggpairs() to create scatterplots and correlations for a set of variables. The text on my correlation plots don't fit onto the plot area, as they are horizontally adjusted to end halfway through the plot. I saw on another post how to…
Chetan Sharma
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How can I get ggpairs to display ancova results in upper panels?

I'm making a scatterplot matrix with ggpairs{GGally) as follows, but I'd like to display the p values for each term in my aov results in the upper panels, rather than just the overall and by-species correlation value that comes with the package. How…
Rachel Fordyce
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ggpairs change axisLabel font size

When plotting internal axisLabels for ggpairs, if numbers are large, they get cropped off. fakedata <- data.frame(Var1=rnorm(500, 3, 6), Var2=runif(500, 0, 5500), Var3=rpois(500, 6), …
emudrak
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ggpairs fill histograms with white

I would like to get the histograms or bar line in the following plot in white. It's mainly for ink saving concerns. library(GGally) library(ggplot2) data(tips, package = "reshape") pm <- ggpairs(tips[,1:3]) I've tried pm + theme(panel.background =…
DJJ
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Error in GGally - Make sure your 'columns' values are less than 5

I'm trying to plot the iris dataset using the GGally package > library(GGally) > ggpairs(iris, columns=c("Sepal.Length", "Sepal.Width", "Petal.Length", "Petal.Width"), colour='Species', lower=list(continuous='points'), axisLabels='none',…
Anthony
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