Stack Overflow
Stack Overflow

Questions tagged [clustal]

Clustal is a set of tools for multiple alignment of nucleic acid and protein sequences.

Clustal2

Clustal2 has two versions: ClustalW presents a command-line interface, and ClustalX provides a GUI.

Clustal Omega

Clustal Omega, or clustalo, is the latest version of Clustal. It employs a new HMM alignment engine, resulting in greater accuracy. Clustal Omega is currently in beta, with a command-line interface and web server version only.

A full description of the algorithms used by Clustal Omega is available in Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Web services

All Clustal products have web server versions that can be accessed at www.clustal.org.

17 questions
0
votes
1 answer

R {ape} clustal cannot find clustalw2

I am a beginner in R. I would like to use R clustal function in package ape to process my DNA sequence, so I can us {pegas} to perform further analysis. However, when I first try the example provided in the manual: clustal(woodmouse, pw.gapopen =…
Hao-Wei Chang
  • 1
  • 1
-1
votes
2 answers

Clustal Omega in Command Line

Below is what I am getting when I type ./configure on terminal while inside the clustal omega package. Welcome to Clustal Omega - version 1.2.1 (AndreaGiacomo) +NMMMMMMMMMS= MMMMM? :MMMMM8 …
programmer
  • 11
  • 4
1
2