Questions tagged [blast]

BLAST is a Basic Local Alignment Search Tool for comparing biological sequence information.

Given some query string, it finds similar (although not necessarily identical) biological sequence strings in a large set of possible candidates. BLAST supports searches with possible sequence mismatches, deletions and insertions. BLAST is open source, written in C++, and was originally developed in 1990.

Wikipedia summary

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parsing blastp output using biopython

I need help to parse the following blastp output for aligning 2 sequences: BLASTP 2.2.28+ Query= Length=237 Subject= Length=268 Score = 429 bits (1104), Expect = 2e-157, Method: Compositional matrix adjust. Identities = 237/268 (88%),…
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