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Questions tagged [ape]

APE is a full-featured open source solution designed for Ajax push. It includes a webserver and a JavaScript framework. APE allows to implement any kind of real-time data streaming to a web browser, without having to install anything on the client-side.

Ajax Push Engine (APE) is a full-featured open source solution designed for Ajax push. It includes a webserver and a JavaScript framework. APE allows to implement any kind of real-time data streaming to a web browser, without having to install anything on the client-side.

APE project: http://www.ape-project.org Related: http://en.wikipedia.org/wiki/Comet_(programming)‎ also: http://ajaxpatterns.org/HTTP_Streaming

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To embed a chat in my site

I want to embed a chat in my site.The chat will be used for intercommunication between two members of site, like, the one used in social networking sites like facebook. Can anyone suggest me which language i need to learn in order to make that work…
Prashant Singh
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Matching elements of two lists of different sizes by their names

I have two lists of different sizes. One list (named * trees * ) is composed of phylogenetic trees (class phylo) and the second list (named * data_values*) is composed of numeric values. The tips names of each phylogenetic tree of the list * tree*…
BMT
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Error occured when ape reading newick tree

I was trying to do ape::read.tree on my newick files. All the read.tree worked well except for one of the file, which I named it 18S. 18S <- ape::read.tree("18S.renamed") Error: unexpected symbol in "18S" I thought it was the extra spaces/dots in…
web
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Running APE Server in a Virtual Machine

I have been trying to set-up an Ajax Push Engine (APE) Server in a virtual machine, and have run into a bit of a snag. The problem is that the APE server cannot be accessed outside of the virtual machine. Setup: Guest OS: Ubuntu 10.10 (I believe)…
NT3RP
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Stop and Reset Wheel Partical - Actionscript Physics Engine (APE) (latest Trunk)

I'm trying to create a simple disappearing action when a WheelParticle hits a special disappearing CircleParticle. Normally the WheelPartical bounces off of a bunch of other CircleParticles, but when the WheelParitcal collides with this…
Get the Jaws of Life
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PCoA function pcoa extract vectors; percentage of variance explained

I have a dataset consisting of 132 observations and 10 variables. These variables are all categorical. I am trying to see how my observations cluster and how they are different based on the percentage of variance. i.e I want to find out if a) there…
Y.P.Toh
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Online card game + chat with PHP

What would be a good way to make a online card game with chat-function in PHP? A colleague mentioned Ajax Push Engine (APE) but APE's latest release is from 2009. Orbited on the other hand doesn't seem to work with PHP. Is there a viable alternative…
iarwain01
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Keeping information of nodes after dropping tips

When I have a tree and some node information stored in a table, I would like to drop tips, and modify the table accordingly. So a new table with the correct new number in column node is necessary. library(ape) library(ggtree) #make…
Ferroao
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extract two columns from dataframe and make into a vector

I have a table with 4 columns, I want to extract column 1 and 3 to make a character vector. My aim is to define colour for a phylogenetic plot Table name id colour date t1 a red 10/01 t2 b red 09/02 t3 c black 04/04 t4 d …
AudileF
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Ape package - extracting distances between nodes

I'm working with ape package currently. My idea is to extract tip labels corresponding to each node and also distances in between the nodes. How can I do this? Thanks a lot for your help
user5691530
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Solution to instantly inform the user about the changes occurred on server

I'm trying to make an web application that will dynamically inform the user about the dynamic changes occur in server (php/mysql/apache). I tried to implement a solution through APE (push) server but documentation is poor and the examples are not…
Milos
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Adding symbols and information to Phylogenetic tree

I am drawing a phylogenetic tree, and I would like to add something like a 'dead symbol̈́̈́' (e.g a skull) in the tips of the extinct species. I would also like to add an x-axes bar with latex symbols in the branching times (e.g $\Delta t_i$ or…
Francisco
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Color the tips of a phylogenetic tree by individual's species

I'm trying to build a phylogenetic tree with bootstrapping using the methodology defined here. Plotting the name of each individual (named 1,2,3,4,... for the sake of this examples) is not informative since I have a HUGE data set. Therefore, I want…
j91
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Reorder all trees in a multiphylo object

Hi I'm trying to reorder all of the trees in a multiphylo object which should just be a form of applying a function over a list, which I have done before. However, I can't seem to get the 'reorder' command from the package APE to work with lapply…
zc1
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Helicon Ape X-Sendfile with Railo

I’m trying to use Helicon Ape’s mod_xsendfile with Railo server (Windows 2012 R2). mod_xsendfile functions correctly and it works fine with PHP, it deliver the file and also it pass the content length value to the browser too. No file size limit…
user3839184
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