I am trying to access "rdkit" module in python, but my python install doesn't seem to find the module. I installed it using brew as suggested here. I included the commands I use to reproduce the problem.
Is a simple fix just adding the "/usr/local/Cellar" to the python path? Symlinc the site-packages to the cellar? Candidly I did not understand the difference between pip and brew when updating my python, so my first thought is that the python path is not correct. Any suggestions greatly appreciated.
X:~\ python3 Python 3.8.1 (v3.8.1:1b293b6006, Dec 18 2019, 14:08:53) [Clang 6.0 (clang-600.0.57)] on darwin Type "help", "copyright", "credits" or "license" for more information.
>>> import rdkit Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ModuleNotFoundError: No module named 'rdkit'
X:~\ which python3
/Library/Frameworks/Python.framework/Versions/3.8/bin/python3
X:~\ python3
Python 3.8.1 (v3.8.1:1b293b6006, Dec 18 2019, 14:08:53)
[Clang 6.0 (clang-600.0.57)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import sys
>>> print(sys.path)
['',
'/Library/Frameworks/Python.framework/Versions/3.8/lib/python38.zip',
'/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8',
'/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload',
'/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages']
**@:/usr/local/Cellar\** ls
boost/ gettext/ libffi/ numpy/ sip/
boost-python3/ glew/ libidn2/ openblas/ sqlite/
cmake/ glib/ libmpc/ openssl@1.1/ tcl-tk/
ddclient/ glm/ libpng/ pandoc/ tree/
eigen/ gmp/ libtiff/ pcre/ webp/
fontconfig/ graphviz/ libtool/ pkg-config/ wget/
freeglut/ gts/ libunistring/ pyqt/ xz/
freetype/ icu4c/ mmtf-cpp/ python/
gcc/ isl/ mpfr/ qt/
gd/ jasper/ msgpack/ **rdkit/**
gdbm/ jpeg/ netpbm/ readline/
Details: OS Catalina: 10.15.3
