access variable declared in a %%bash cell from another jupyter cell

Question

In a jupyter notebook I have a bash jupyter cell as follows:

%%bash

export MYVAR="something"

I would like to access $MYVAR in a different python cell. For example

print(MYVAR)

I would expect the cell to print "something", but I get a NameError message.

Example image:

score 6 · Accepted Answer · answered Jun 01 '19 at 07:58

6

You can try capturing the output to a python variable:

In [1]:

%%bash --out my_var

MYVAR="something"
echo "$MYVAR"

In [2]:

print(my_var)

something

Also, you might find this blog post useful.

answered Jun 01 '19 at 07:58

Hlib Babii

score 1 · Answer 2 · answered Jan 03 '20 at 05:21

One workaround is to store the output of variable from bash cell into a temp file, and then read it in python cell or other bash cell. For example

%%bash
my_var="some variable"

echo $my_var > /tmp/my_var

my_var = !cat /tmp/my_var
print(my_var)

Output is: ['some variable']

2 Answers2