I'm trying to create a Python interface to the C Cholmod library, part of the SuiteSparse library (SuiteSparse).
As I'm new to Swig, I don't know if this is a daunting task or not. I didn't find any reference to this interface done in Swig.
Compiling happens without trouble.
This is the error I get when I try to import the swig-generated "_cholmod.py" file:
Python 2.7.5+ (default, Feb 27 2014, 19:37:08)
[GCC 4.8.1] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import _cholmod
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "_cholmod.py", line 99, in <module>
class SuiteSparse_config_struct(_object):
File "_cholmod.py", line 106, in SuiteSparse_config_struct
__swig_setmethods__["malloc_func"] =
__cholmod.SuiteSparse_config_struct_malloc_func_set
NameError: name '_SuiteSparse_config_struct__cholmod' is not defined
Where is this name defined? A quick grep doesn't return anything before I try to import the extension but this after I try to import it:
grep -R -n _SuiteSparse_config_struct__cholmod *
Binary file _cholmod.pyc matches
I'm using:
- SWIG Version 3.0.5 Compiled with g++ [x86_64-unknown-linux-gnu] Configured options: +pcre
- cholmod library from SuiteSparse 4.4.3
Here is a minimal example:
File setup.py:
from distutils.core import setup, Extension
module1 = Extension('__cholmod',
sources=['cholmod.i'],
libraries=['cholmod', 'suitesparseconfig', 'blas', 'amd'],
library_dirs=['/home/nikolaj/Documents/WORK/Dominique/suitesparse
4.4.1-1_ArchLinux/suitesparse-4.4.1-1-x86_64.pkg/usr/lib/'],
include_dirs=['/home/nikolaj/Documents/WORK/Dominique/suitesparse
4.4.1-1_ArchLinux/suitesparse-4.4.1-1-x86_64.pkg/usr/include/'],
swig_opts=['-I/home/nikolaj/Documents/WORK/Dominique/suitesparse
4.4.1-1_ArchLinux/suitesparse-4.4.1-1-x86_64.pkg/usr/include/'])
setup(name='_cholmod', version='0.1', ext_modules=[module1])
and I invoke it like this:
python setup.py build_ext --inplace
File cholmod.i:
/* -*- C -*- */
#ifdef SWIGPYTHON
%module _cholmod
%{
#define SWIG_FILE_WITH_INIT
#include "SuiteSparse_config.h"
#include "cholmod_config.h"
#include "cholmod_core.h"
#include "numpy/arrayobject.h"
%}
%feature("autodoc", "1");
%init %{
import_array();
%}
%include "SuiteSparse_config.h
%include "cholmod_config.h"
%include "cholmod_core.h"
#endif
I suspect there is a problem with typedef and a C struct but after reading over and over tutorials, the official documentation, presentations I really don't know what I'm missing.
Could anyone help me here? Thanks a lot!