I just switched to the anaconda distribution of python, and I'm having trouble with a few packages. One example is pytables:
~$ ipython
Python 2.7.6 |Anaconda 1.8.0 (64-bit)| (default, Jan 17 2014, 10:13:17)
Type "copyright", "credits" or "license" for more information.
IPython 1.1.0 -- An enhanced Interactive Python.
? -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help -> Python's own help system.
object? -> Details about 'object', use 'object??' for extra details.
In [1]: import tables
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-1-389ecae14f10> in <module>()
----> 1 import tables
/nfs/slac/g/ki/ki18/anja/awright/anaconda/lib/python2.7/site-packages/tables/__init__.py in <module>()
80
81 # Necessary imports to get versions stored on the cython extension
---> 82 from tables.utilsextension import (get_pytables_version, get_hdf5_version,
83 getPyTablesVersion, getHDF5Version) # Pending Deprecation!
84
ImportError: /nfs/slac/g/ki/ki18/anja/awright/anaconda/lib/python2.7/site-packages/tables/utilsextension.so: undefined symbol: H5Pset_file_image
I tried to fix the problem, but it's not happening. This package was working with my previous python distribution, so it's not like my computer is incompatible. Can anyone offer some advice?
Here is what I've already tried to do:
~$ conda list tables
# packages in environment at /nfs/slac/g/ki/ki18/anja/awright/anaconda:
#
# Warning: subprocess call to pip failed
pytables 3.0.0 np17py27_1
~$ conda search tables
pytables 2.4.0 np16py26_0 defaults
2.4.0 np16py27_0 defaults
2.4.0 np17py26_0 defaults
2.4.0 np17py27_0 defaults
3.0.0 np16py26_0 defaults
3.0.0 np16py27_0 defaults
3.0.0 np17py26_0 defaults
3.0.0 np17py27_0 defaults
3.0.0 np16py26_1 defaults
3.0.0 np16py27_1 defaults
3.0.0 np17py26_1 defaults
* 3.0.0 np17py27_1 defaults
3.0.0 np17py33_1 defaults
~$ conda update tables
Error: package 'tables' is not installed in /nfs/slac/g/ki/ki18/anja/awright/anaconda
~$ conda install tables
Error: No packages found matching: tables
~$ conda install pytables
# All requested packages already installed.
# packages in environment at /nfs/slac/g/ki/ki18/anja/awright/anaconda:
#
pytables 3.0.0 np17py27_1
~$ conda update pytables
# All requested packages already installed.
# packages in environment at /nfs/slac/g/ki/ki18/anja/awright/anaconda:
#
pytables 3.0.0 np17py27_1
